Rosetta FlexPepDock is a high-resolution peptide docking (refinement) protocol, implemented within the Rosetta framework. The input for this server is a PDB file of a complex between a protein receptor (first chain) and an estimated conformation for a peptide (second chain). FlexPepDock was shown to be able to accurately refine the peptide structure starting from up to 5.5A RMSD of the native conformation, allowing full flexibility to the peptide and side-chain flexibility to the receptor. For more details see the "Overview" and "Usage & FAQ" sections. Read about us in Science magazine.
Recently shared jobs: 1abc_abcl33b.pdb Peptide#3.pdb Peptide_3.pdb 1M60, pep-F 3upr w/ pep-v backbone 3upr_test w/ pep-v backbone 3UPR.pdb B5701 w/ peptide V fXIIa-subs.000.02.pdb flex_dock_1QRQ_PIF_fix.pdb
E-mail addresses submitted to FlexPepDock's web server are only used for tracking user's usage and returning analysis results. We may also contact you via email should any problem arise with you submission. Be sure that email addresses are not used for any other purpose and are not passed to third parties.
Intellectual Property Disclaimer
All data submitted to FlexPepDock's web server and it's analysis results is publicly accessible, hence we cannot guarantee confidentiality.